Integrative network analysis for survival-associated gene-gene interactions across multiple genomic profiles in ovarian cancer

Table 4 Network Topologies for different α values

α	Profile	Vertices	Edges	Number of components	Size of largest component	R ²
0.0	mRNA	9,997	2,562,178	1	9,997	0.643
	CNA	10,021	2,472,048	1	10,021	0.590
	METH	9,801	554,048	1	9,801	0.839
	I^∀	1,244	1,538	61	1,105	0.914
	I^∃	10,022	5,385,486	1	10,022	0.366
0.1	mRNA	9,943	1,125,398	1	9,943	0.758
	CNA	9,934	1,090,500	1	9,934	0.749
	METH	9,118	221,680	1	9,118	0.842
	I^∀	138	95	44	27	0.950
	I^∃	10,022	2,396,372	1	10,022	0.505
0.5	mRNA	6,466	20,219	25	6,418	0.810
	CNA	2,886	23,143	9	2,855	0.831
	METH	2,166	3,641	25	2,116	0.700
	I^∃	8,032	46,975	11	8,012	0.864
0.8	mRNA	641	555	112	358	0.804
	CNA	245	526	10	106	0.892
	METH	145	115	32	58	0.690
	I^∃	1,002	1,196	137	579	0.913
1.0	mRNA	73	45	28	11	0.797
	CNA	13	17	1	13	0.363
	METH	15	8	7	3	1.000
	I^∃	100	70	35	23	0.803

ISSN: 1757-2215