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Table 1 In silico analysis of the FIGLA mutation

From: Consanguineous familial study revealed biallelic FIGLA mutation associated with premature ovarian insufficiency

Gene

Mutation

Amino acid change

Consanguinity

Zygosity

Mutation Tastera

SNPs&GOb

FATHMM-MKLc

ExAC (total)d

ExAC (East Asian)e

gnomAD (total)f

FIGLA

c.2 T > C

Start ATG shift

Yes

Homozygous

Disease causing

(1)

Neutral

(0.157)

Damaging

(0.8119)

0

0

0

  1. aMutation Taster (http://www.mutationtaster.org/). The probability value is the probability of the prediction, i.e., a value close to 1 indicates a high ‘security’ of the prediction
  2. bSNPs&GO (http://snps.biofold.org/snps-and-go/). Disease probability (if > 0.5 mutation is predicted Disease)
  3. cFATHMM-MKL (http://fathmm.biocompute.org.uk/fathmmMKL.htm). Values above 0.5 are predicted to be deleterious, while those below 0.5 are predicted to be neutral or benign
  4. dFrequency of variations in total of ExAC database.
  5. eFrequency of variations in East Asian population of ExAC database
  6. fFrequency of variation in total of gnomAD (genome Aggregation Database, a big database containing 123,136 exome sequences and 15,496 whole-genome sequences)