From: A risk model of gene signatures for predicting platinum response and survival in ovarian cancer
Gene | DE mRNA | DE CN | Variant | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
logFC | p.value | logFC | p.value | Chrom | Variant Position | Type | Variant Classification | Amino acids | Codons | Reference Allele | Tumor Allele | dbSNP_RS | |
CD209 | 0.358543 | 0.0142 | −0.42485 | 0.012717 | 19 | 7,807,996 | SNP | Missense | R | Agg/Cgg | C | T | rs11465393 |
CD274 | 0.437529 | 0.00976 | 0.460916 | 0.002227 | 9 | 5,462,907 | SNP | Missense | G/V | gGg/gTg | G | T | novel |
HIST1H3I | −0.43754 | 0.00255 | 0.30903 | 0.010138 | 6 | 27,839,796 | SNP | Missense | P/LX | cca/cTca | A | G | novel |
HIST1H4L | −0.43335 | 0.0143 | 0.30903 | 0.010138 | 6 | 27,841,216 | SNP | Missense | T | acA/acG | C | T | novel |
NLGN1 | 1.019701 | 0.00143 | 0.351201 | 0.004621 | 3 | 173,525,589 | SNP | Missense | T/M | aCg/aTg | G | C | novel |
NTRK3 | −0.36699 | 0.0247 | 0.295746 | 0.007258 | 15 | 88,576,170 | SNP | Silent | L | Ctg/Ttg | C | G | novel |
88,483,904 | SNP | Nonsense | T | acG/acC | C | A | novel | ||||||
88,522,597 | SNP | Intron | R/W | Cgg/Tgg | G | A | novel | ||||||
88,423,602 | SNP | Missense | T | acG/acA | G | A | novel | ||||||
88,420,205 | SNP | Missense | D/X | Gat/at | C | A | novel | ||||||
88,476,380 | SNP | Missense | Y | taC/taT | A | T | novel | ||||||
PNLDC1 | −0.85134 | 0.000718 | −0.34754 | 0.003742 | 6 | 160,240,313 | SNP | Silent | I/M | atC/atG | G | C | novel |
SLC22A3 | −0.51215 | 0.0225 | −0.30286 | 0.005976 | 6 | 160,872,083 | SNP | Missense | Y/* | taC/taG | C | T | novel |
SLC5A1 | 0.298462 | 0.00642 | 0.441319 | 0.001623 | 22 | 32,495,226 | SNP | Nonsense | V | gtC/gtT | C | G | novel |
SYNM | 0.558712 | 0.00288 | 0.448385 | 0.001034 | 15 | 99,672,483 | SNP | Silent | T/R | aCg/aGg | A | G | novel |
99,669,768 | SNP | Silent | T | acC/acT | G | A | novel | ||||||
99,671,917 | SNP | Missense | R | cgG/cgC | G | C | novel | ||||||
99,672,905 | SNP | Missense | T/N | aCc/aAc | C | G | novel | ||||||
99,653,864 | SNP | Silent | D/E | gaT/gaA | C | T | novel | ||||||
99,672,085 | SNP | Missense | Y/H | Tac/Cac | G | T | novel |