From: DNA double-strand break genetic variants in patients with premature ovarian insufficiency
Gene | Location | Function | Mutation | Genotype | Type of Variants | Amenorrhea | Familial/Sporadic | References |
---|---|---|---|---|---|---|---|---|
PRDM9 | 5p14.2 | determines the positioning of the recombinant hotspots | c.229C > T, p. Arg77* | het | secondary | sporadic | [14] | |
c.638 T > G, p.Ile213Ser | het | secondary | sporadic | |||||
c.677A > T, p.Lys226Met | het | secondary | sporadic | |||||
ANKRD31 | 5q13.3 | regulates the assembly of pre-DSB recombinsomes | c.1565-2A > G | het | splice site | secondary | sporadic | [14] |
c.985C > T, p.Gln329* | het | nonsense | secondary | sporadic | ||||
NBN | 8q21.3 | participates in DNA end resection | c.871C > T, p.(Gln291*) | hom | nonsense | primary | sporadic | [52] |
c.657_661del5 | hom | Slavic founder | secondary | sporadic | [53] | |||
HSF2BP | 21q22.3 | promotes homologous chromosomes synapsis and the formation of crossover | S167L | hom | missense | secondary | familial | [54] |
c.382 T > C, p.C128R | hom | missense | secondary | sporadic | [55] | |||
c.557 T > C, p.L186P | hom | missense | secondary | sporadic | ||||
EXO1 | 1q43 | participates in DNA end resection | c.155C > G, p.Thr52Ser | het | missense | primary | sporadic | [56] |
c.668G > A, p.Gly223Asp | het | missense | primary | sporadic | ||||
PSMC3IP | 17q21.2 | promotes the formation of nucleoprotein filament indirectly and strand exchange | c.496_497delCT, p.R166Afs | com het | Deletion | primary | sporadic | [57] |
c.430_431insGA, p.L144* | Insertion | |||||||
c.489 C > G, p.Tyr163Ter | hom | stop gain | familial | [58] | ||||
c.597 + 1G > T | com het | splicing | familial | [59] | ||||
c.268G > C, p.D90H | ||||||||
c.206_208delAGA, p.Lys69del | com het | deletion | familial | [60] | ||||
c.189 G > T, p.Lys63Asn | missense | familial | ||||||
BRCA2 | 13q13.1 | mediates the binding of recombinase RAD51 to ssDNA | c.7579delG, p.V2527X | com het | deletion | primary | familial | [61] |
c.9693delA, p. S3231fs16* | deletion | |||||||
c.8524C > T, p.R2842C | hom | missense | primary | familial | [62] | |||
DMC1 | 22q13.1 | binds ssDNA during meiosis | c.106G > A, p.Asp36Asn | hom | missense | secondary | familial | [63] |
MEIOB | 16p13.3 | MEIOB-SPATA22 complexes can be recruited to DSB sites, promoting intact synapsis and the foramtion of crossover | c.1218G > A | hom | splicing | secondary | familial | [64] |
c.683-1G > A | hom | splicing | secondary | familial | [65] | |||
SPATA22 | 17p13.2 | c.400C > T, p.R134X | hom | nonsense | normal | familial | [66] | |
c.900 + 1G > A | com het | splicing | secondary | sporadic | ||||
c.31C > T, p.R11X | ||||||||
SPIDR | 8q11.21 | promotes the formation of nucleoprotein filament | c.839G > A, p.W280* | hom | stop-gain | primary | familial | [67] |
c.814C > T, R272* | hom | nonsense | primary | sporadic | [68] | |||
MSH4 | 1p31.3 | MSH4-MSH5 heterodimer can bind and stabilize the Holliday intermediates, promoting the formation of crossover | c.2355 + 1G > A | hom | donor splice-site | secondary | familial | [69] |
c.2261C > T, p.Ser754Leu | hom | missense | secondary | familial | [70] | |||
c.2198C > A, p.Ser733Ter | hom | stop-gain | secondary | sporadic | [71] | |||
MSH5 | 6p21.33 | c.1459G > T, p.D487Y | hom | missense | secondary | familial | [72] | |
c.1057C > A, p.L353M | het | secondary | sporadic | |||||
c.1459G > T, p.D487Y | het | secondary | sporadic | |||||
c.2107 A > G, p.I703V | het | secondary | sporadic | |||||
c.C1051G, p.R351G | het | missense | primary | sporadic | [73] | |||
c.2063 T > C, p.I688T | com het | secondary | sporadic | [74] | ||||
c.604G > C, p.G202R | ||||||||
MCM8 | 20p12.3 | MCM8-MCM9 hellicase complex participates in DNA end resection and promotes intermediates processing | c.446C > G, p.P149R | hom | missense | primary | familial | [75] |
c.1954-1G > A | hom | splice | primary | familial | [76] | |||
c.1469-1470insTA | hom | frameshift | primary | familial | ||||
c.464G > A, p.Cys155Tyr | het | primary | sporadic | [77] | ||||
c.548A > G, p.Asn183Ser | het | primary | sporadic | |||||
c.1334G > A, p.Arg445Gln | het | missense | primary | sporadic | ||||
c. A950T, p. H317L | het | missense | primary | sporadic | [78] | |||
c. A1802G, p. H601R | het | missense | secondary | sporadic | ||||
c. 482A > C, p.His161Pro | hom | missense | primary | familial | [79] | |||
c.89A > C, p.K30T | com het | familial | [80] | |||||
c.1330A > G, p.I444V | ||||||||
c.925C > T, p.R309* | hom | familial | ||||||
c.925C > T, p.R309* | hom | nonsense | primary | familial | [81] | |||
c.724 T > C, p.C242R | com het | missense | primary | familial | [82] | |||
c.1334C > A, p.S445* | termination | |||||||
c.351_354 delAAAG, p. K118Efs*5 | hom | frameshift | primary | familial | [83] | |||
MCM9 | 6q22.31 | MCM8-MCM9 hellicase complex participates in DNA end resection and promotes intermediates processing | c.1732 + 2 T > C, | hom | splicing | primary | familial | [84] |
c.394C > T, p.Arg132* | hom | insertion | primary | familial | ||||
c.397 T > C, p.Thr139Ala | het | secondary | sporadic | [77] | ||||
c.2422G > A, p.Val808Ile | het | missense | secondary | sporadic | ||||
c.1784C > G, p.Thr595Arg | het | missense | primary | sporadic | ||||
c.1651C > T, p.Gln551* | hom | stop gain | primary | sporadic | ||||
c.1483G > T, p.E495* | hom | nonsense | primary | familial | [85] | |||
c.220C > T, p.R74* | hom | familial | [80] | |||||
c.1473dup, p.Thr492TyrfsTer4 | hom | frameshift | familial | [86] | ||||
c.2059 T > C, p.F687L | com het | missense | primary | sporadic | [87] | |||
c.3223C > T, p.P1075S | missense | |||||||
c.1163C > A, p.T388N | het | secondary | sporadic | |||||
c.C1423T, p.L475F | het | missense | secondary | sporadic | [88] | |||
c.T2921C, p.L974S | het | missense | secondary | sporadic | ||||
c.G3388A, p.A1130T | het | missense | secondary | sporadic | ||||
c.2488G > A, p.A830T | het | missense | secondary | sporadic | [89] | |||
c.1157C > T, p.T386M | com het | secondary | sporadic | [74] | ||||
c.1291A > G, p.M431V | sporadic | |||||||
HFM1 | 1p22.2 | promotes homologous chromosomes synapsis and the formation of crossover | c.1686–1 G → C | com het | familial | [90] | ||
c.2651 T → G, p.Ile884Ser | ||||||||
c.2206 G → A, p.Gly736Ser | com het | sporadic | ||||||
c.3929_3930 delinsG, p.Pro1310Arg fs*41 | frameshift | |||||||
c.148G > A, p.Glu50Lys | het | missense | sporadic | [91] | ||||
c.1241A > C, p.His414Pro | het | missense | sporadic | |||||
c.2325C > A, p.Phe775Leu | het | missense | sporadic | |||||
c.3367 T > C, p.Ser1123Pro | het | missense | sporadic | |||||
c.3580C > T,p.Arg1194Cys | het | missense | sporadic | |||||
c.1686-1G > C | het | splice-site | sporadic | |||||
c.3470G > A | het | missense | secondary | familial | [91] | |||
c.3100G > A, p.G1034S | com het | missense | secondary | sporadic | [92] | |||
c.1006 + 1G > T | splice-site | |||||||
ERCC6 | 10q11.23 | promotes HR while suppresses NHEJ | c.C1769C > T, p. P590L | het | missense | secondary | sporadic | [74] |
(CSB-PGBD3) | c.643G > T, p. E215X | het | nonsense | secondary | sporadic | [93] | ||
c.3166G > A, p. V1056I | het | missense | secondary | sporadic | ||||
STAG3 | 7q22.1 | maintains cohesin stability, ensures correct assemblage and segregation of homologous chromosomes | c.968delC, p.F187fs*7 | hom | frameshift | primary | familial | [94] |
c.1947_48dupCT, p.(Y650Sfs*22) | hom | duplication | primary | familial | [95] | |||
c.1573 + 5G > A, p.Leu490Thrfs*10 | hom | donor splice site | primary | familial | [96] | |||
c.291dupC, p.Asn98Glnfs*2 | com het | loss-of-function | primary | sporadic | ||||
c.1950C > A, p.Tyr650* | loss-of-function | sporadic | ||||||
c.3052delC, p.Arg1018Aspfs*14 | com het | deletion | primary | familial | [98] | |||
c.659 T > G, p.Leu220Arg | missense | familial | ||||||
c.877_885del, p.293_295del | hom | in-frame | primary | familial | [99] | |||
c.891_893dupTGA, p.297_298insAsp | hom | in-frame | primary | familial | ||||
c.962G A, p.Arg321His | hom | missense | primary | familial | [100] | |||
c.962G > A, p.(Arg321His) | hom | missense | primary | sporadic | [101] | |||
c.1336G > T, p.(Glu446Ter) | hom | nonsense | primary | familial | [102] | |||
c.659 T > G, p.Leu220Arg | het | primary | sporadic | [103] | ||||
c.938A > T, p.Tyr313Phe | com het | primary | sporadic | |||||
c.1999C > T, p.Arg667Cys | primary | sporadic | ||||||
c.2473C > G, p.Leu825Val | het | primary | sporadic | |||||
c.2612G > A, p.Arg871His | het | primary | sporadic | |||||
c.3381_3384delAGAA, p.Glu1128Metfs*42 | hom | deletion | primary | sporadic | [104] | |||
c.1942G > A, p. Ala648Thr | hom | missense | familial | [105] | ||||
c.1951_1953del, p. Leu652del | hom | in-frame deletion | familial | |||||
c.2773delT, p.Ser925Profs*6 del | hom | deletion | primary | sporadic | [106] | |||
REC8 | 14q12 | part of the cohesin complex | c.1035_1036dup p.Glu346Glyfs*72 | Com het | frameshift | secondary | familial | [107] |
c.624 + 1 G > A p.? | splicing | |||||||
SMC1B | 22q13.31 | part of the cohesin complex | c.662 T > C, I221T | het | missense | secondary | sporadic | [108] |
c.3530A > T, Q1177L | het | missense | primary | sporadic | ||||
C14orf39 | 14q23.1 | part of the synaptonemal complex | c.204_205del, p.His68Glnfs*2 | hom | frameshift | secondary | familial | [109] |
c.508C > T, p.Arg170* | hom | nonsense | secondary | sporadic | [110] | |||
SYCE1 | 10q26.3 | part of the synaptonemal complex | c.613C > T, p.Gln205* | hom | nonsense | primary | familial | [111] |
hom | deletion | secondary | familial | [112] | ||||
c.475G > A, p.Glu159Lys | com het | missense | secondary | sporadic | [110] | |||
c.689_690del, p.Phe230Serfs*21 | frameshift | |||||||
NHEJ1 | 2q35 | stabilizes and enhances the ligation activity of the XRCC4-LIG4 complex | c.532C > T, p.R178* | het | nonsense | secondary | familial | [113] |
c.500A > G, p.Y167C | het | missense | secondary | sporadic |