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Table 3 Prediction of effect of SNPs on physicochemical properties of mutated proteins

From: Exploring the association of ESR1 and ESR2 gene SNPs with polycystic ovary syndrome in human females: a comprehensive association study

#

SNP ID

No. of amino acids

Mol. Wt

pI

Half life

(hours)

Ext. coefficient

(M−1cm−1)

Aliphatic index

Instability index

GRAVY

ESR1

 1

Normal

649

72,431.96

5.48

30

62,520

73.70

42.52

-0.499

 2

rs1583384537

649

72,431.01

5.56

30

62,520

73.70

42.75

-0.500

 3

rs1554259481

90

9722.94

5.20

30

8940

73.89

17.52

-0.461

 4

rs104893956

164

17,655.67

4.73

30

14,900

67.93

41.73

-0.496

 5

rs761613029

649

72,430.97

5.52

30

62,520

73.70

42.52

-0.499

 6

rs778449608

649

72,431.01

5.56

30

62,520

73.70

42.50

-0.500

 7

rs866869178

649

72,403.90

5.43

30

62,520

73.70

41.75

-0.497

 8

rs188957694

649

72,372.88

5.43

30

62,520

73.70

41.90

-0.494

 9

rs755667747

318

35,092.17

6.67

30

35,340

51.04

46.66

-0.820

 10

rs1467954450

369

40,674.70

6.22

30

36,830

57.99

46.27

-0.727

 11

rs1584799119

649

72,430.97

5.52

30

62,520

73.70

42.77

-0.499

 12

rs1131692059

649

72,412.91

5.47

30

62,520

73.70

42.20

-0.497

 13

rs762742833

520

58,068.64

5.31

30

56,560

69.27

43.04

-0.537

 14

rs758798083

649

72,432.94

5.43

30

62,520

73.70

42.02

-0.499

 15

rs1253340312

535

60,744.21

6.16

30

50,725

75.50

45.06

-0.554

 16

rs1436999383

640

71,529.98

5.56

30

62,520

73.97

42.49

-0.507

ESR2

 1

Normal

530

59,216.33

8.81

30

63,590

83.34

55.32

-0.288

 2

rs1463893698

71

7738.54

5.28

30

8940

64.51

68.91

-0.432

 3

rs140630557

132

14,699.48

7.86

30

21,555

70.83

66.53

-0.595

 4

rs1450198518

530

59,232.33

8.81

30

63,590

83.15

55.32

-0.293

 5

rs754945292

530

59,218.30

8.81

30

63,590

82.96

54.79

-0.297

 6

rs1596423459

200

22,176.86

8.71

30

33,390

59.95

63.83

-0.595

 7

rs766843910

236

26,452.90

9.21

30

36,745

58.64

65.47

-0.644

 8

rs1596405923

338

37,655.09

9.24

30

58,995

68.40

61.82

-0.462

 9

rs762454979

338

37,877.39

9.20

30

53,370

71.83

59.52

-0.445

 10

rs1384121511

346

38,859.68

9.02

30

53,370

73.27

60.37

-0.394

 11

rs1249242790

530

59,216.28

8.81

30

63,590

82.42

56.15

-0.303

 12

rs1414263985

530

59,231.39

8.91

30

63,590

83.15

55.32

-0.293

 13

rs78255744

530

59,278.40

8.81

30

63,590

82.96

54.15

-0.290

 14

rs768924970

530

59,148.27

8.84

30

63,715

82.23

56.13

-0.295

 15

rs1257844897

478

53,614.00

8.94

30

67,475

84.46

53.59

-0.231

 16

rs200502775

524

58,533.64

8.81

30

63,590

84.29

53.95

-0.260